PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291317
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 910aa    MW: 101819 Da    PI: 9.2722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291317genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000187697223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   kC +C++ F ++ n++rHir+H
  MDP0000291317 76 KCDKCPREFCSSINYRRHIRVH 97
                   7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.03475102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807798IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MSIAKPTTSN SLFAMKSKEE NDSLDTIIKQ AAKEPSISFS RAGDSPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK  120
CMFSPFHDLV FVQLSPEEAT EAISFKNVTL EEVPGSSIIK ALTTLIRKPG FSPFPHIYLK  180
AGSALLDIFQ ARPSRFPISS QELFSILDDA SEKTFLSGTA ISMQRYIFDG EAGKIGLESK  240
NLVACTSFLV EQKLLKAWHA DKDTEALRLQ KLLVEEEEAA QRRQTELLER KRQKKLRQKE  300
LKEKDQRHGE KVDVTENIDE TLEAVPLVET SSPSATFDSD TASSDMLDHA CLSLESFQLS  360
NMDVSADPES QTGVNFGHVD SVSGPNVERP VVQGNGSRRA VAQWQLSPKS QRGVPNGFHG  420
GHSSQTLKHS STKHHGNHRD ARAASSGNRV WSRKPKPEYD GRSLKAGEQK EASEPDQIKN  480
REVLIGSIPV NLGNCCQESN NQAGVHDDCL SEKGQMPKDN SQDKTNKPDL VQSGTNRSTV  540
KLWRPVSRNG TKGPMPIQNG SKESDINVVA EKGNSQNPYS ENCEGSCVVD GHNVGNGNDS  600
THPDETGRLG FSSHAAKDFL AQRWKDAIAA DHVELVLFQD SEPPRCPENQ NDREVAATHP  660
SRFKRSILGN AENRLVNGEA FDLPTAGAAK VRRRTKHDKG VKIKYIPKPS AVAYRPFLFS  720
LSCVFRTVSM ASWMRPTDQT SRFLDRHFVY EGAFVMSFRV TAFEVEIEKE KTADPTDLNH  780
PEEREHVYKQ QNDDVPASSL KYLNPKRGQT METASRANRI SFWQLNALIV MVVLAARGLV  840
SPLDLAFPAS IRLPFKRPAG LQRRGHNGQN RPGFRRRVGP RPADSVYISR VFGRRPRRHQ  900
SGCPARVFTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288295ERKRQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.106380.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376597.10.0PREDICTED: uncharacterized protein LOC103439767
TrEMBLM5X2260.0M5X226_PRUPE; Uncharacterized protein
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein